Research Overview

SECQUOIA's research unifies mathematical optimization, process systems engineering, quantum and emerging computing architectures, privacy-preserving machine learning, and open-source scientific software. Across these connected pillars, we develop rigorous models, scalable algorithms, and curated benchmark suites that translate theory into deployable tools for chemical, energy, materials, and biomedical systems. Read our Mission & Vision or explore opportunities on Join Us.

Mathematical Optimization, GDP, and MINLP

We develop theory, convexification and hull reformulations, decomposition algorithms, and derivative-free configuration search methods for Generalized Disjunctive Programming (GDP) and Mixed-Integer Nonlinear Programming (MINLP). Representative directions include regularized outer approximation, logic-based discrete steepest descent, quadratic disjunctive programming, and hybrid branch-and-bound methods.

Process Systems Engineering and Sustainable Operations

Our optimization frameworks address core synthesis, design, and operational challenges in process systems engineering—spanning catalytic distillation and process intensification, reverse electrodialysis and water-energy networks, refinery scheduling, bio-based chemical manufacturing, and resilient supply chains.

Quantum Optimization, Simulation, and Benchmarking

We investigate how gate-model quantum processors, quantum annealers, coherent Ising machines, and GPU-accelerated tensor networks tackle structured discrete optimization and Hamiltonian simulation problems. Work spans hybrid quantum-classical decomposition, QUBO/Ising encodings, circuit transpilation, and utility-scale hardware evaluation.

Scientific AI, Federated Learning, and Autonomous Research

We design machine learning and AI methodologies that respect physical constraints, distributed data ownership, and scientific verification—covering privacy-preserving federated and quantum-federated learning across chemical engineering and healthcare, surrogate/Bayesian circuit optimization, and multi-agent AI research workflows.

Open-Source Software, Problem Libraries, and Reproducibility

Reproducible open-source software is a first-class scholarly output of our group. We build and maintain algebraic modeling extensions, MINLP/GDP decomposition solvers, problem reformulation compilers, and community benchmark suites across the Python (Pyomo) and Julia (JuMP / JuliaQUBO) ecosystems.

Sponsors & Acknowledgments

Research in SECQUOIA has been generously supported by federal agencies, industry partners, multi-university quantum centers, and institutional awards:

Contact & Inquiries

Prospective Ph.D. students, postdoctoral associates, visiting scholars, and collaborators are invited to contact Prof. David E. Bernal Neira directly using this form. See Join Us for details on what to include.

Direct Inquiries

Messages submitted via this form go directly to Prof. David E. Bernal Neira. For prospective student, postdoctoral, and collaboration guidance, visit Join Us.

Location

Purdue University
Forney Hall of Chemical Engineering, G027C
480 Stadium Mall Drive
West Lafayette, IN 47907-2100
USA